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Detection of Diseased Salmon Through Advanced Image Processing and Comparative Model Evaluation
Corresponding Author(s) : Farhan
Kinetik: Game Technology, Information System, Computer Network, Computing, Electronics, and Control,
Vol. 11, No. 4, November 2026 (Article in Progress)
Abstract
The rapid spread of diseases in aquaculture poses significant risks to fish health, operational efficiency, and food safety. Manual inspection of fish conditions is time-consuming, subjective, and ineffective for large-scale monitoring. This study presents an advanced image-based detection framework for identifying diseased salmon using modern deep learning architectures, including ResNet-18, EfficientNetV2, Vision Transformer (ViT),
Swin Transformer, and ConvNeXt. The SalmonScan dataset was preprocessed through normalization, resizing, and data augmentation to enhance generalization. Each model was trained and evaluated using accuracy, precision, recall, and F1-score. Additionally, Grad-CAM visualization was applied to interpret model decisions and highlight infection-related regions on fish images. Experimental results demonstrate that transformer-based and next-generation CNN architectures significantly outperform conventional methods, with ConvNeXt and ViT achieving up to 99.59% accuracy. These findings indicate that modern deep learning models combined with explainable visual analysis provide a highly reliable and interpretable solution for automatic disease detection in salmon aquaculture.
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- Food and Agriculture Organization, The State of World Fisheries and Aquaculture 2022. Rome: FAO, 2022. doi: 10.4060/cc0461en.
- B. Austin and D. A. Austin, Bacterial Fish Pathogens, 6th ed. Cham: Springer International Publishing, 2016. doi: 10.1007/978-3-319-32674-0.
- R. J. Roberts, Fish Pathology. Hoboken: Wiley, 2012. doi: 10.1002/9781118222942.
- P. T. K. Woo and D. W. Bruno, Fish diseases and disorders. Volume 3: viral, bacterial and fungal infections. Wallingford: CABI, 2011. doi: 10.1079/9781845935542.0000.
- M. S. Ahmed and S. M. Jeba, “SalmonScan: A novel image dataset for machine learning and deep learning analysis in fish disease detection in aquaculture,” Data Br., vol. 54, p. 110388, Jun. 2024, doi: 10.1016/j.dib.2024.110388.
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- B. M. Mathisen, K. Bach, E. Meidell, H. Måløy, and E. S. Sjøblom, “FishNet: A Unified Embedding for Salmon Recognition,” in ECAI 2020, G. De Giacomo, A. Catalá, B. Dilkina, M. Milano, S. Barro, A. Bugarín, and J. Lang, Eds., Santiago de Compostela, Spain: IOS Press, Aug. 2020, pp. 1476–1483. doi: 10.48550/arXiv.2010.10475.
- M. S. Ahmed, T. T. Aurpa, and M. A. K. Azad, “Fish Disease Detection Using Image Based Machine Learning Technique in Aquaculture,” J. King Saud Univ. - Comput. Inf. Sci., vol. 34, no. 8, pp. 5170–5182, Sep. 2022, doi: 10.1016/j.jksuci.2021.05.003.
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- M. Tan and Q. V. Le, “EfficientNetV2: Smaller Models and Faster Training,” in Proceedings of the 38th International Conference on Machine Learning, M. Meila and T. Zhang, Eds., PMLR, Jul. 2021, pp. 10096–10106. doi: 10.48550/arXiv.2104.00298
- Z. Liu, H. Mao, C.-Y. Wu, C. Feichtenhofer, T. Darrell, and S. Xie, “A ConvNet for the 2020s,” in 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), IEEE, Jun. 2022, pp. 11966–11976. doi: 10.1109/CVPR52688.2022.01167.
- A. Dosovitskiy et al., “An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale,” in International Conference on Learning Representations, Jun. 2021. doi: 10.48550/arXiv.2010.11929.
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- N. Shang, C. Zhang, W. Zhang, X. Zhang, and Y. Zhang, “Assessment of fish health status for waterless transportation based on image features and deep learning models,” Aquaculture, vol. 595, p. 741697, Jan. 2025, doi: 10.1016/j.aquaculture.2024.741697.
- X. Li, S. Zhao, C. Chen, H. Cui, D. Li, and R. Zhao, “YOLO-FD: An accurate fish disease detection method based on multi-task learning,” Expert Syst. Appl., vol. 258, p. 125085, Dec. 2024, doi: 10.1016/j.eswa.2024.125085.
- H. Liu, X. Ma, Y. Yu, L. Wang, and L. Hao, “Application of Deep Learning-Based Object Detection Techniques in Fish Aquaculture: A Review,” J. Mar. Sci. Eng., vol. 11, no. 4, p. 867, Apr. 2023, doi: 10.3390/jmse11040867.
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- D. Wang et al., “Detection and identification of fish skin lesions in the underwater environment based on improved YOLOv8 model for aquaculture,” Aquaculture, vol. 608, p. 742722, Sep. 2025, doi: 10.1016/j.aquaculture.2025.742722.
- N. H. Harun, S. N. Md Pauzi, M. G. Hassan, N. Yusoff, B. C. Kua, and N. Gordon, “Integration of contrast-adaptive colour correction and convolutional neural network for cryptocaryon fish disease detection,” Aquac. Fish., vol. 11, no. 4, pp. 684–696, Jul. 2026, doi: 10.1016/j.aaf.2025.11.008.
- M. Öz, E. Üstüner, S. Çifci, F. Budak, E. İleri, and S. Dikel, “Artificial intelligence for fish disease diagnosis and management: innovations, challenges, and One Health implications,” Aquac. Int., vol. 33, no. 7, p. 652, Dec. 2025, doi: 10.1007/s10499-025-02352-7.
- A. Utku, A. Barut, and H. Alofaysan, “Innovative solutions for aquaculture: detecting fish diseases with hybrid deep learning model and explainable artificial intelligence,” Aquac. Int., vol. 34, no. 1, p. 13, Jan. 2026, doi: 10.1007/s10499-025-02406-w.
- R. R. Selvaraju, M. Cogswell, A. Das, R. Vedantam, D. Parikh, and D. Batra, “Grad-CAM: Visual Explanations from Deep Networks via Gradient-Based Localization,” in 2017 IEEE International Conference on Computer Vision (ICCV), IEEE, Oct. 2017, pp. 618–626. doi: 10.1109/ICCV.2017.74.
- A. Krizhevsky, I. Sutskever, and G. E. Hinton, “ImageNet classification with deep convolutional neural networks,” Commun. ACM, vol. 60, no. 6, pp. 84–90, Jun. 2017, doi: 10.1145/3065386.
- Y. LeCun, Y. Bengio, and G. Hinton, “Deep learning,” Nature, vol. 521, no. 7553, pp. 436–444, May 2015, doi: 10.1038/nature14539.
- D. P. Kingma and J. Ba, “Adam: A Method for Stochastic Optimization,” in International Conference on Learning Representations, San Diego, CA, USA, May 2015. doi: 10.48550/arXiv.1412.6980.
References
Food and Agriculture Organization, The State of World Fisheries and Aquaculture 2022. Rome: FAO, 2022. doi: 10.4060/cc0461en.
B. Austin and D. A. Austin, Bacterial Fish Pathogens, 6th ed. Cham: Springer International Publishing, 2016. doi: 10.1007/978-3-319-32674-0.
R. J. Roberts, Fish Pathology. Hoboken: Wiley, 2012. doi: 10.1002/9781118222942.
P. T. K. Woo and D. W. Bruno, Fish diseases and disorders. Volume 3: viral, bacterial and fungal infections. Wallingford: CABI, 2011. doi: 10.1079/9781845935542.0000.
M. S. Ahmed and S. M. Jeba, “SalmonScan: A novel image dataset for machine learning and deep learning analysis in fish disease detection in aquaculture,” Data Br., vol. 54, p. 110388, Jun. 2024, doi: 10.1016/j.dib.2024.110388.
J. Kay and M. Merrifield, “The Fishnet Open Images Database: A Dataset for Fish Detection and Fine-Grained Categorization in Fisheries,” arXiv Prepr. arXiv2106.09178, Jun. 2021, doi: 10.48550/arXiv.2106.09178.
B. M. Mathisen, K. Bach, E. Meidell, H. Måløy, and E. S. Sjøblom, “FishNet: A Unified Embedding for Salmon Recognition,” in ECAI 2020, G. De Giacomo, A. Catalá, B. Dilkina, M. Milano, S. Barro, A. Bugarín, and J. Lang, Eds., Santiago de Compostela, Spain: IOS Press, Aug. 2020, pp. 1476–1483. doi: 10.48550/arXiv.2010.10475.
M. S. Ahmed, T. T. Aurpa, and M. A. K. Azad, “Fish Disease Detection Using Image Based Machine Learning Technique in Aquaculture,” J. King Saud Univ. - Comput. Inf. Sci., vol. 34, no. 8, pp. 5170–5182, Sep. 2022, doi: 10.1016/j.jksuci.2021.05.003.
H. Chakravorty and P. Das, “Image Processing Technique and SVM for Epizootic Ulcerative Syndrome Fish Image Classification,” 2024, pp. 273–281. doi: 10.1007/978-3-031-47221-3_24.
H. Van Nguyen, T. Q. Huynh, N. M. Nguyen, A. K. Su, and H. T. Nguyen, “Comparative Analysis of Fine-Tuned MobileNet Versions on Fish Disease Detection,” 2024, pp. 201–212. doi: 10.1007/978-3-031-64766-6_20.
H. Tamut, R. Ghosh, K. Gosh, and M. A. S. Siddique, “Enhancing Disease Detection in the Aquaculture Sector Using Convolutional Neural Networks Analysis,” Aquac. J., vol. 5, no. 1, p. 6, Mar. 2025, doi: 10.3390/aquacj5010006.
F. Rachman, M. Akbar, and E. Putera, “Fish Disease Detection of Epizootic Ulcerative Syndrome Using Deep Learning Image Processing Technique,” in international Conference on Fisheries and Aquaculture, The International Institute of Knowledge Management, Jan. 2023, pp. 23–34. doi: 10.17501/23861282.2023.8102.
A. G. Howard et al., “MobileNets: Efficient Convolutional Neural Networks for Mobile Vision Applications,” arXiv Prepr. arXiv1704.04861, Mar. 2017, doi: 10.48550/arXiv.1704.04861.
K. He, X. Zhang, S. Ren, and J. Sun, “Deep Residual Learning for Image Recognition,” in 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), IEEE, Jun. 2016, pp. 770–778. doi: 10.1109/CVPR.2016.90.
M. Tan and Q. V. Le, “EfficientNetV2: Smaller Models and Faster Training,” in Proceedings of the 38th International Conference on Machine Learning, M. Meila and T. Zhang, Eds., PMLR, Jul. 2021, pp. 10096–10106. doi: 10.48550/arXiv.2104.00298
Z. Liu, H. Mao, C.-Y. Wu, C. Feichtenhofer, T. Darrell, and S. Xie, “A ConvNet for the 2020s,” in 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), IEEE, Jun. 2022, pp. 11966–11976. doi: 10.1109/CVPR52688.2022.01167.
A. Dosovitskiy et al., “An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale,” in International Conference on Learning Representations, Jun. 2021. doi: 10.48550/arXiv.2010.11929.
Z. Liu et al., “Swin Transformer: Hierarchical Vision Transformer using Shifted Windows,” in 2021 IEEE/CVF International Conference on Computer Vision (ICCV), IEEE, Oct. 2021, pp. 9992–10002. doi: 10.1109/ICCV48922.2021.00986.
N. Shang, C. Zhang, W. Zhang, X. Zhang, and Y. Zhang, “Assessment of fish health status for waterless transportation based on image features and deep learning models,” Aquaculture, vol. 595, p. 741697, Jan. 2025, doi: 10.1016/j.aquaculture.2024.741697.
X. Li, S. Zhao, C. Chen, H. Cui, D. Li, and R. Zhao, “YOLO-FD: An accurate fish disease detection method based on multi-task learning,” Expert Syst. Appl., vol. 258, p. 125085, Dec. 2024, doi: 10.1016/j.eswa.2024.125085.
H. Liu, X. Ma, Y. Yu, L. Wang, and L. Hao, “Application of Deep Learning-Based Object Detection Techniques in Fish Aquaculture: A Review,” J. Mar. Sci. Eng., vol. 11, no. 4, p. 867, Apr. 2023, doi: 10.3390/jmse11040867.
M. Hamzaoui, M. Ould-Elhassen Aoueileyine, S. Bouallegue, and R. Bouallegue, “Enhanced detection of Argulus and epizootic ulcerative syndrome in fish aquaculture through an improved deep learning model,” J. Aquat. Anim. Health, vol. 37, no. 3, pp. 97–109, Sep. 2025, doi: 10.1093/jahafs/vsaf001.
D. Wang et al., “Detection and identification of fish skin lesions in the underwater environment based on improved YOLOv8 model for aquaculture,” Aquaculture, vol. 608, p. 742722, Sep. 2025, doi: 10.1016/j.aquaculture.2025.742722.
N. H. Harun, S. N. Md Pauzi, M. G. Hassan, N. Yusoff, B. C. Kua, and N. Gordon, “Integration of contrast-adaptive colour correction and convolutional neural network for cryptocaryon fish disease detection,” Aquac. Fish., vol. 11, no. 4, pp. 684–696, Jul. 2026, doi: 10.1016/j.aaf.2025.11.008.
M. Öz, E. Üstüner, S. Çifci, F. Budak, E. İleri, and S. Dikel, “Artificial intelligence for fish disease diagnosis and management: innovations, challenges, and One Health implications,” Aquac. Int., vol. 33, no. 7, p. 652, Dec. 2025, doi: 10.1007/s10499-025-02352-7.
A. Utku, A. Barut, and H. Alofaysan, “Innovative solutions for aquaculture: detecting fish diseases with hybrid deep learning model and explainable artificial intelligence,” Aquac. Int., vol. 34, no. 1, p. 13, Jan. 2026, doi: 10.1007/s10499-025-02406-w.
R. R. Selvaraju, M. Cogswell, A. Das, R. Vedantam, D. Parikh, and D. Batra, “Grad-CAM: Visual Explanations from Deep Networks via Gradient-Based Localization,” in 2017 IEEE International Conference on Computer Vision (ICCV), IEEE, Oct. 2017, pp. 618–626. doi: 10.1109/ICCV.2017.74.
A. Krizhevsky, I. Sutskever, and G. E. Hinton, “ImageNet classification with deep convolutional neural networks,” Commun. ACM, vol. 60, no. 6, pp. 84–90, Jun. 2017, doi: 10.1145/3065386.
Y. LeCun, Y. Bengio, and G. Hinton, “Deep learning,” Nature, vol. 521, no. 7553, pp. 436–444, May 2015, doi: 10.1038/nature14539.
D. P. Kingma and J. Ba, “Adam: A Method for Stochastic Optimization,” in International Conference on Learning Representations, San Diego, CA, USA, May 2015. doi: 10.48550/arXiv.1412.6980.